Publications

• BVPy: A FEniCS-based Python package to ease the expression and study of boundary value problems in Biology.

F. Gacon, C. Godin & O. Ali - Journal of Open Source Software: 6, 2831 (2021).

• Microtubule-Mediated Wall Anisotropy Contributes to Leaf Blade Flattening.

F. Zhao*, F. Du*, H. Oliveri*, L. Zhou*, O. Ali*, et al - Current Biology: CB, 30 (1-14) (2020)

• Simulating Turgor-Induced Stress Patterns in Multilayered Plant Tissues.

O. Ali, H. Oliveri, J. Traas & C. Godin - Bull. Math. Biol., pp.1–23. (2019)

• Regulation of plant cell wall stiffness by mechanical stress: a mesoscale physical model.

H. Oliveri, J. Traas, C. Godin & O. Ali - J. Math. Biol., pp.1–29. (2018)

• Transcriptional induction of cell wall remodelling genes is coupled to microtubule-driven growth isotropy at the shoot apex in Arabidopsis.

A. Armezzani, U. Abad, O. Ali, A. A. Robin, L. Vachez, A. Larrieu, E. J. Mellerowicz, L. Taconnat, V. Battu, T. Stanislas, M. Liu, T. Vernoux, J. Traas & M. Sassi - Development, 145(11), pp.dev162255–11. (2018)

• DRACO-STEM: An Automatic Tool to Generate High-Quality 3D Meshes of Shoot Apical Meristem Tissue at Cell Resolution.

G. Cerutti, O. Ali & C. Godin - Front. Plant Sci, vol. 8 pp.13-15. (2017)

• Force-Driven Polymerization and Turgor-Induced Wall Expansion.

O. Ali & J. Traas -Trends in Plant Science, 21(5), pp.398–409. (2016)

• A computational framework for 3D mechanical modeling of plant morphogenesis with cellular resolution.

F. Boudon*, J. Chopard*, O. Ali*, B. Gilles, O. Hamant, A. Boudaoud, J. Traas & C. Godin - PLoS Comp.Biol. 11(1). (2015)

• An auxin-mediated shift toward growth isotropy promotes organ formation at the shoot meristem in Arabidopsis.

M. Sassi, O. Ali, F. Boudon, G. Cloarec, U. Abad, C. Cellier, X. Chen, B. Gilles, P. Milani, J. Friml, T. Vernoux, C. Godin, O. Hamant & J. Traas - Current biology : CB, 24(19), pp.2335–2342. (2014)

• Physical models of plant development.

O. Ali, V. Mirabet, C. Godin & J. Traas - Annual review of cell and developmental biology, 30, pp.59–78. (2014)

• Cooperativity between integrin activation and mechanical stress leads to integrin clustering.

O. Ali, H. Guillou, O. Destaing, C. Albigès-Rizo, M. R. Block & B. Fourcade - Biophysical Journal, 100(11), pp.2595–2604. (2011)

• Excitable waves at the margin of the contact area between a cell and a substrate.

O. Ali, C. Albigès-Rizo, M. R. Block & B. Fourcade - Phys. Biol, 6(2), p.025010. (2009)

• Physical model for membrane protrusions during spreading.

F. Chamaraux, O. Ali, S. Keller, F. Bruckert & B. Fourcade - Phys. Biol, 5(3), p.036009. (2008)